FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005497626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005497626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48469497
Sequences flagged as poor quality0
Sequence length35-101
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG918050.1894077836211092No Hit
CGTCTCACTCAAACCGCCTCGAACCCCACACCGACGAGCTCCCTCAGGAC697900.1439874649410948No Hit
CGTCCATCCTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCACC624680.12888105688408527No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA507010.10460393265479936No Hit
CTCTCTCTCCCCCGTCTCCCTCCCGAGTTCTCCGGCTCTCGCGGCCGGCG501320.10342999845861821No Hit
CTCTCTCTCTCTCTCTCTCTCCCCCGTCTCCCTCCCGAGTTCTCCGGCTC495480.10222511696376796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)