FastQCFastQC Report
Thu 12 May 2022
EGAF00005497656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005497656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47365837
Sequences flagged as poor quality0
Sequence length35-101
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1458400.3079012411413737No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG626400.13224721437942707No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA603420.12739561638064162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)