FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005497658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005497658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45588693
Sequences flagged as poor quality0
Sequence length35-101
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1788030.39220909447875596No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA946750.20767210852041754No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG692590.15192144245065328No Hit
GGCTGCTAGGCGCCGGCCGAGGCGAGGCGCCGCGCGGAACCGCGGCCCCG629470.13807590404050407No Hit
CCCCTGGTCCGCACCAGTTCTAAGTCGGCTGCTAGGCGCCGGCCGAGGCG499790.10963025415095799No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC465610.10213278103849129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)