FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005497660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005497660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63929570
Sequences flagged as poor quality0
Sequence length35-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1194490.18684467923059705No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCA837480.1310004118594885No Hit
CCTTGGTCCGTGTTACAAGACGGGTCGGGTGGGTAGCCGACGTCGCCGCC782640.12242222182942886No Hit
CGTCTCACTCAAACCGCCTCGAACCCCACACCGACGAGCTCCCTCAGGAC717910.1122970168577702No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN672120.10513444717366313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)