FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005497678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005497678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43087187
Sequences flagged as poor quality0
Sequence length35-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1051190.24396811980322594No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA501600.11641511895404079No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG449180.1042490891781819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)