FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005498043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005498043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76611479
Sequences flagged as poor quality0
Sequence length100
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT1345930.17568255013064032No Hit
CATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGC996430.1300627546950242No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA932990.12178201128319165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)