FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005498061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005498061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63291601
Sequences flagged as poor quality0
Sequence length100
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT973660.15383715763486533No Hit
CATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGC694530.10973493939582916No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG641560.10136574045583079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)