FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005498070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005498070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69915362
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTAT4275420.6115136756354062TruSeq Adapter, Index 21 (97% over 40bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1242310.1776877018815979No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC958050.13702997060932046No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA789120.11286789876021809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)