FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005499141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005499141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40098
Sequences flagged as poor quality0
Sequence length200
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTCCTCAGCGTCAGTAACGGCCCAGAGACCTGCCTTCGCCATTGGT1204130.028929123647064No Hit
TTCGCGCCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGT457911.41952217068183No Hit
TTCGCTCCTCAGCGTCAGTGACGGCCCAGAGACCTGCCTTCGCCATCGGT39119.753603671006035No Hit
TTCGAGCCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGA37979.469300214474538No Hit
TTCGAGCCTCAGCGTCAGTTACAGACCAGAGAGCCGCCTTCGCCACTGGT36129.007930570103246No Hit
TTCGTGCCTCAGCGTCAGTATATGGCCAGATAGCCGCCTTCGCCACCGGT18684.658586463165245No Hit
TTCGTGCATCAGCGTCAGTCATGGCTTGGCAGGCTGCCTTCGCAATCGGG12513.1198563519377527No Hit
TTCGCACCTCAGCGTCAGTATTTGTCCAGCAAGCCGCCTTCGCCACTGGT10622.648511147688164No Hit
TTCGAGCATCAGTGTCAGTAACAGTCTAGTGAGCTGCCTTCGCAATCGGA7421.8504663574243105No Hit
TTCGTGCCTCAGCGTCAGTTACAGTCCAGAGAGCCGCCTTCGCAACTGGT7381.8404907975460123No Hit
TTCGTGCATGAGCGTCAGTCATGTCCCAGAGGGCTGCCTTCGCCATCGGT6361.5861140206494089No Hit
TTCGAGCCTCAGCGTCAGTTACAGTCCAGAAAGGCGCCTTCGCCACTGGT4131.029976557434286No Hit
TTCGAGTCTCAGCGTCAGTTGCAGACCAGGTAGCCGCCTTCGCCACTGGT4081.0175071075864133No Hit
TTCGCTCCTCAGCGTCAGTGACGGCCCAGAGACCTGCCTTCGCCATTGGT3870.9651354182253479No Hit
TTCGCTCCTCAGCGTCAGTAACGGCCCAGAGACCTGCCTTCGCCATCGGT3480.8678737094119408No Hit
TTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGT2920.7282158711157664No Hit
TTCGAGCCTCAGCGTCAGTTACAGACCAGACAGCCGCCTTCGCCACTGGT2240.5586313531846975No Hit
TTCGCCCCTCAGCGTCAGTATTTGTCCAGCAAGCCGCCTTCGCCACTGGT1430.35662626564915956No Hit
TTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAGTCGCCTTCGCCACTGGT950.23691954710958152No Hit
TCGCTCCTCAGCGTCAGTAACGGCCCAGAGACCTGCCTTCGCCATTGGTG890.22195620729213425No Hit
TTCGCGCCTCAGCGTCAGTCGCGGCCCAGAAGACTGCCTTCGCCATCGGT790.19701730759638883No Hit
TTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGT740.18454785774851612No Hit
TTCGTGCATCAGCGTCAGTCATGGCTTTGCAGGCTGCCTTCGCAATCGGG560.13965783829617437No Hit
TTCGAGCCTCAGCGTCAGTTACAGTCCAGAAAGGCGCCTTCGCCACCGGT510.12718838844830166No Hit
TTCGTGCATTAGCGTCAGTCATGTCCCAGAGGGCTGCCTTCGCCATCGGT460.11471893860042896No Hit
TTCGCGCCTCAGCGTCAGTGCTCGTCCAGAAAGCCGCCTTCGCCACCGGT450.1122250486308544No Hit
TCGCGCCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTG410.10224948875255625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)