FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005555583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005555583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46672178
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGGCCCCCGGCGCCCCCCCGGTGTCCCCGCGAGGGGCCCGGGGCGGG709410.15199847755122978No Hit
CGGCGCCCCCCCGGTGTCCCCGCGAGGGGCCCGGGGCGGGGTCCGCCGGC618910.13260791043434914No Hit
GTGGGAGGCCCCCGGCGCCCCCCCGGTGTCCCCGCGAGGGGCCCGGGGCG576840.12359397498012627No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)