FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005560856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005560856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6840585
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGAACT3200.0096071868.6663971
CCGAATC6500.0096600097.480295770
CGCCACG9306.241367E-46.970885370
TTCGGCG12002.5962545E-65.76750226
ATTCGGC12505.341146E-65.53651825
GGATTCG14806.1929677E-75.377530623
CTACTCG11703.516726E-45.0282626
Produced by FastQC (version 0.11.5)