FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005560877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005560877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7865283
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTCGGC4705.3934875E-410.2816970
CGCGATT5550.0022026856.87802534
TTCGGCG8551.4428036E-46.08545526
ATTCGGC10501.0580046E-55.94628425
CGGCTAA16858.314601E-95.5577119
GATTCGG10759.570401E-55.485226624
ACCCTCG8900.0093224885.066138710
Produced by FastQC (version 0.11.5)