FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005560893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005560893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6317259
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGACT3150.0081134258.84716751
GCAGCGT10350.00215067026.249606670
CGCCGTT7853.04E-46.206169648
TCGCCGT8003.8967733E-46.087722347
ATTCGGC7850.00215636995.73687119
GCGGCTC12300.00234207465.6970570
GGATTCG10100.00139189555.14479217
TTAGCCG11502.6801648E-45.1210137
Produced by FastQC (version 0.11.5)