Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005560908 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8245893 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCGGA | 395 | 0.0 | 17.646248 | 57 |
TCGTCGG | 450 | 0.0 | 15.484765 | 56 |
ATCGTCG | 455 | 0.0 | 15.310404 | 55 |
GTCGGAC | 570 | 0.0 | 12.844038 | 58 |
TCGGACT | 710 | 1.8189894E-12 | 10.806317 | 59 |
GATCGTC | 650 | 2.7284841E-11 | 10.714477 | 54 |
CGTATTG | 485 | 0.0072896606 | 8.963408 | 70 |
CGGCTAG | 390 | 5.1442604E-4 | 8.926557 | 53 |
GTGCCTA | 2555 | 0.0 | 8.415123 | 20 |
CGGACTG | 980 | 1.03682396E-10 | 8.187479 | 60 |
GCCTACA | 2835 | 0.0 | 7.95116 | 22 |
CGCGATC | 535 | 1.7634613E-4 | 7.780986 | 3 |
TGCCTAC | 3280 | 0.0 | 6.8723783 | 21 |
CTACAGT | 3600 | 0.0 | 6.8396926 | 24 |
ATTGATG | 3370 | 0.0 | 6.585818 | 13 |
TACAGTT | 4080 | 0.0 | 6.2901382 | 25 |
TTGATGG | 3795 | 0.0 | 6.0310345 | 14 |
CCTACAG | 4235 | 0.0 | 5.977848 | 23 |
AGACCGG | 735 | 0.0062309806 | 5.6810813 | 51 |
TGAACGA | 760 | 0.008962616 | 5.4968796 | 53 |