FastQCFastQC Report
Mon 8 Aug 2022
EGAF00005568200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005568200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5843420
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT288320.4934096813167631No Hit
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA286380.4900897077396456No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGAGCTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAG95250.16300385733012515TruSeq Adapter, Index 7 (97% over 37bp)
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG77970.13343213392157333No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGAGCTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA59480.1017897053437884TruSeq Adapter, Index 7 (97% over 37bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)