FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005572660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005572660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences797884876
Sequences flagged as poor quality0
Sequence length18-102
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAAATA941250.010.0061151
CGAATCG137100.09.9731611
CGAAAAA1488350.09.7425271
CGGATTA474300.09.5556341
CGAAAGA1074650.09.4268851
CGAAAAG1020600.09.200051
CGCTAAT494050.09.0768721
CGACGGA142900.08.86581
CGAAAAT1204500.08.5932081
CGAATTA599600.08.3561061
CGATATA505950.08.277531
CGAATAA845250.08.014731
CGAAACA913950.07.99814561
CGAAGAA1140250.07.91600751
CGACTTA359100.07.8815311
CGACTAT312650.07.8750451
CGAGAAA1199750.07.8740911
CGAAATT853850.07.8556181
CGAATCA729700.07.71800851
CGATGGA742050.07.7055261
Produced by FastQC (version 0.11.5)