FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005572668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005572668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences797884876
Sequences flagged as poor quality0
Sequence length18-102
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAAATA941200.010.0015711
CGAATCG136850.09.9913841
CGAAAAA1488200.09.7627871
CGGATTA474300.09.5153181
CGAAAGA1073600.09.440561
CGAAAAG1020800.09.2310341
CGCTAAT493900.09.0699521
CGACGGA143050.08.8230861
CGAAAAT1204050.08.5924521
CGAATTA599400.08.3190161
CGATATA506500.08.2779841
CGAATAA844850.08.0185281
CGAAACA913300.08.0090751
CGAAGAA1139700.07.9114411
CGACTTA359350.07.88935471
CGAGAAA1199700.07.8784071
CGACTAT312550.07.87756731
CGAAATT854450.07.8445091
CGAATCA729600.07.73872661
CGATGGA741550.07.70427661
Produced by FastQC (version 0.11.5)