FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16602990
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA481090.28976106111007716No Hit
GTTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC390340.23510223158599747No Hit
GTGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA360690.21724400243570588No Hit
GTGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG222020.13372290171830495No Hit
GTGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA211300.1272662333712181No Hit
GTGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG207640.12506181115570147No Hit
GTATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC181020.10902855449530476No Hit
GTCCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC172220.10372830435963643No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)