FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23392390
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1584560.6773826872756482No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1293690.5530388301494631No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC666260.2848191228001927No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG572060.2445496163495906No Hit
ATTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAAC537600.22981832980725783No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC532100.22746713781704223No Hit
ATTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG476710.20378849702830706No Hit
ATGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA453100.19369547104849055No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG437080.1868470900151716No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA426500.1823242516049023No Hit
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT375130.16036411841628836No Hit
ATATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAG367030.15690145384887993No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG359940.1538705536287656No Hit
ATCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA342800.1465433844083482No Hit
ATAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTG328690.1405115082298132No Hit
ATCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGGCTTTT323400.13825008902467853No Hit
ATGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG321340.1373694607519796No Hit
ATTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA304380.13011923963306013No Hit
ATCTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAA263950.1128358410577115No Hit
ATGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGA251220.10739390032399425No Hit
ATCCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC249750.10676549082842754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)