FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34875130
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAA982810.28180826852831803No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG677470.1942559067163334No Hit
CTCTGTTTGGCAGACGAAGCCTTCCCTTCATCCCGAAGTTCATCGAGCTT614570.17622013165255584No Hit
GGCGTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATA547820.15708041805148826No Hit
GCCCACTTTTCCTAGGTTTCTTGAGACCTCTACAAGAGTTGGAGTTGACA431130.12362104456671559No Hit
CTGGCGTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGA398230.11418738797532799No Hit
CTTCAGGATGTTTACAACATTTGCTGCCCACTTTTCCTAGGTTTCTTGAG350450.10048708062163497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)