FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17244511
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGA603020.3496880833559154No Hit
CTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAA523490.30356906032302106No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG442030.256330840578779No Hit
CTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTG402990.23369175269742354No Hit
CTCATTTTTTCAGTGCTATTTTATCCAATTTTTGGCTTTATATTTTTCTA382610.22187349934132666No Hit
GTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGT358230.20773566730886137No Hit
CCCCGCCTCAGTTACACATCCAAACTCTACATTTACAAAACGAATTCAGG330210.19148701868090084No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT256830.14893434786292287No Hit
CTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACTTTT211210.12247955305894147No Hit
CGGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATT207550.1203571385700644No Hit
GCCTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCA191460.11102663334437259No Hit
CTCCGTCATGTTTTAGAAACCTTTTATCTTTTCCTTCCTCATGCTACTCT180300.10455500883730481No Hit
CCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGAAA179040.10382434155424877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)