FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17244511
Sequences flagged as poor quality0
Sequence length100
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAAGCTAGGAAG307020.17803926130465514No Hit
CGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGATAG258630.14997815826728864No Hit
CGGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGT237930.13797433861708228No Hit
CGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGA231060.13399046224041958No Hit
CGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACC222900.12925852174062807No Hit
CGCGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC186340.10805757263862106No Hit
CGGGAAGCTAGGAAGAAGGAAGGAGCGCTAACGATTTGGTGGTGAAGCTA182260.10569160238872533No Hit
CGCTAGGAAGAAGGAAGGAGCGCTAACGATTTGGTGGTGAAGCTAGGAAA179080.10384753734101246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)