FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31976522
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA879490.27504242018565994No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTG439690.1375040099733173No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTTATTTCCAACGTTG322380.1008177186999887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)