FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31106514
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1255390.40357784867825436No Hit
CGTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC801750.25774344241852365No Hit
CGGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG657580.2113962368139355No Hit
CGCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC631990.20316966407743406No Hit
CGCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT613980.1973798799826943No Hit
CGCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA541920.174214314082253No Hit
CGATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC519630.16704861239031799No Hit
CGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA476330.1531286983813101No Hit
CGGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC409440.13162516378402286No Hit
CGCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG367470.11813281295358265No Hit
CGCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTT357680.1149855621880356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)