FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19238323
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT371000.19284425154936843No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT330130.17160019612936117No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG224980.11694366499616417No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTC221180.1149684408563054No Hit
CTCATTTTTTCAGTGCTATTTTATCCAATTTTTGGCTTTATATTTTTCTA207040.10761852787272572No Hit
CCCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAAC193270.1004609393448691No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)