FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005576943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005576943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44575412
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1809080.40584706205295423No Hit
ATGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA1147770.25748948770232344No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA824430.18495173976182205No Hit
ATGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG785760.17627655354032398No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC651530.14616353966621776No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC642410.14411756867216394No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG629920.14131557550157922No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG541630.12150869183216971No Hit
ATATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAG530350.1189781487605768No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG474640.10648022726071495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)