FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005577059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39578777
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT689560.1742246861240811No Hit
GACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA583480.14742244309368124No Hit
GATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC414790.1048011160122507No Hit
GAGTTTAAACAGTTCAGTGATCTTTAGTGCATTGTTTATGTGTGGGTTTC406010.10258275539944046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)