FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005577063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19817256
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1124620.5674953182216549No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC712830.35970166606315224No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC436100.22006073898424686No Hit
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT400350.202020905416976No Hit
ATGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA326630.16482100246371142No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG320710.16183370694711718No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA315730.15932074551592815No Hit
ATTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAAC309420.1561366518149637No Hit
ATTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG289990.14633206534749313No Hit
ATATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAG275010.13877299662475975No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC270970.13673436927897586No Hit
ATGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG256760.12956385081769142No Hit
ATCCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC253240.1277876210510678No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG243130.12268600657931654No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG225950.11401679425244342No Hit
ATCACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGA200210.1010281140840084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)