FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005577141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59022388
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1520180.25755989405240604No Hit
GACTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT1346780.22818121150909718No Hit
GATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1175160.19910410944402995No Hit
GACAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG763860.12941868770202927No Hit
GACACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGA690400.1169725630213403No Hit
GAATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC686560.11632196243906634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)