FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005577197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26441537
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT907880.34335371654075936No Hit
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA688010.2602004565770893No Hit
ATCCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC525860.198876487399352No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC365180.13810846169797164No Hit
ATCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCA344390.1302458325323524No Hit
ATGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA308030.11649474083144258No Hit
ATCACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGA303990.11496684175356371No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC300340.1135864378836979No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA280120.10593937863748239No Hit
ATGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG269010.1017376561733155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)