FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005577241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20745852
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA437460.21086624931094658No Hit
GACTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT432510.20848023016842113No Hit
GATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC262240.12640599190623744No Hit
GACCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC243850.11754156927370348No Hit
GAGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA232320.11198383175586137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)