FastQCFastQC Report
Sun 11 Jun 2023
EGAF00005577249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38190429
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT652480.17084908891701636No Hit
ATCCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC453760.11881510940869504No Hit
ATCGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC427010.11181073666389031No Hit
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA414850.10862669282924264No Hit
ATCACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGA404340.1058746944162371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)