EGAF00005577265 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577265
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	39599
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	65	0.16414555923129373	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	52	0.13131644738503498	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAAGTCATGTCA	51	0.12879113108916893	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	48	0.12121518220157075	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	48	0.12121518220157075	No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT	45	0.11363923331397258	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	45	0.11363923331397258	No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGAGGCTCACTCAC	44	0.11111391701810651	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	44	0.11111391701810651	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	41	0.10353796813050835	No Hit
GTATTAGGAGGGGGGTTGTTAGGGGGTCGGAGGAAAAGGTTGGGGAACAG	41	0.10353796813050835	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	40	0.1010126518346423	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATCC	10	0.0076871277	140.96582	5
CGATCCC	10	0.0076871277	140.96582	6
CGCATGA	35	4.3284217E-6	125.26772	145
CCCTACC	35	3.906645E-5	80.5519	2
AACCACG	35	3.906645E-5	80.5519	7
GAGTGCA	30	0.0021495717	70.48291	7
AGTGCAA	30	0.0021495717	70.48291	8
CCACGAC	40	7.572089E-5	70.48291	9
ACCACGA	45	1.3565342E-4	62.651478	8
CGGATGC	35	0.003959957	60.41393	9
CTAAACT	35	0.003959957	60.41393	4
AGTACGG	35	0.003959957	60.41393	5
GTACGGA	35	0.003959957	60.41393	6
TAGTACG	35	0.003959957	60.41393	4
AGGGATA	50	2.2838681E-4	56.386326	8
GAGGGAT	50	2.2838681E-4	56.386326	7
GTCCTAA	40	0.006717541	52.862183	1
TGAGTGC	40	0.006717541	52.862183	6
CTACGTA	40	0.006717541	52.862183	9
ACGGATG	40	0.006717541	52.862183	8