FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005577270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5027
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN320.6365625621643127No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG90.17903322060871296No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT80.15914064054107818No Hit
ATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCT70.1392480604734434No Hit
GTATAAACTAATACACCAGTCTTGTAAACCGGAGATGAAAACCTTTTTCC60.11935548040580862No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG60.11935548040580862No Hit
ATTTAGGCTTTATGACCCTGAAGTAGGAACCAGATGTCGGATACAGTTCA60.11935548040580862No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)