FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005577274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6947
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC130.18713113574204693No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT130.18713113574204693No Hit
GTTGTATATAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATT120.1727364329926587No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT110.15834173024327047No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA110.15834173024327047No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA90.12955232474449402No Hit
ACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTT90.12955232474449402No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCAC90.12955232474449402No Hit
GTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCGGTGCCTC80.1151576219951058No Hit
CTACAAGGACAGGCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGT80.1151576219951058No Hit
ACTATATCTATTGCGCCAGGTTTCAATTTCTATCGCCTATACTTTATTTG80.1151576219951058No Hit
CCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCT80.1151576219951058No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN80.1151576219951058No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG80.1151576219951058No Hit
TACTACAGGTGGTCAAGTATTTATGGTACCGTACAATATTCATGGTGGCT80.1151576219951058No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG80.1151576219951058No Hit
ACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTT80.1151576219951058No Hit
CCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAA70.10076291924571758No Hit
GCCCTTACTAGACCAATGGGACTTAAACCCACAAACACTTAGTTAACAGC70.10076291924571758No Hit
GATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTAC70.10076291924571758No Hit
ATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCT70.10076291924571758No Hit
GGTTAAGGTTGTCTGGTAGTAAGGTGGAGTGGGTTTGGGGCTAGGTTTAG70.10076291924571758No Hit
GTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACAC70.10076291924571758No Hit
ATGATAGGCATGTGATTGGTGGGTCATTATGTGTTGTCGTGCAGGTAGAG70.10076291924571758No Hit
GTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAA70.10076291924571758No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA70.10076291924571758No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC70.10076291924571758No Hit
GTGTACGCGCTTCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTTTA70.10076291924571758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)