EGAF00005577279 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577279
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	103331
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATT	148	0.14322904065575676	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	134	0.12968034762075273	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAGAGTCATGTCA	131	0.126777056256109	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	130	0.12580929246789443	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	119	0.11516389079753414	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	118	0.11419612700931955	No Hit
GCCTAGGACTGTGGGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTT	116	0.11226059943289042	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	113	0.1093573080682467	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	111	0.10742178049181757	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	107	0.10355072533895927	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	107	0.10355072533895927	No Hit
CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA	106	0.10258296155074469	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	55	3.99481E-7	97.18481	145
TCAGAGT	45	0.0020635675	71.26886	145
ACATGAG	40	7.3450916E-5	71.02692	9
GAACATG	45	1.3158972E-4	63.135033	7
CAGCGCT	35	0.0038587893	60.880215	4
ATCTAGG	35	0.0038587893	60.880215	1
CACAGCG	35	0.0038587893	60.880215	2
ACTCAGT	35	0.0038587893	60.880215	6
AAGTCCG	35	0.0038587893	60.880215	5
AGAAAGG	90	7.458568E-6	59.390713	145
TTCCGAT	60	0.00644942	53.451645	145
CAGGTAA	40	0.006546091	53.270187	9
CCCAGGG	40	0.006546091	53.270187	2
CGCTAAG	40	0.006546091	53.270187	7
AGCGCTA	40	0.006546091	53.270187	5
GTCCGTG	80	6.7082146E-7	53.270187	7
CCCCAGG	40	0.006546091	53.270187	1
GTAAGTC	40	0.006546091	53.270187	3
TTGTATA	95	3.6476195E-8	52.335625	2
AGCCTTA	55	3.547302E-4	51.655937	6