FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005577302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5580
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN180.3225806451612903No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA80.14336917562724014No Hit
GGTATATGGTTAGTGTGTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATG80.14336917562724014No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT70.12544802867383512No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG70.12544802867383512No Hit
ATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCC60.10752688172043011No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA60.10752688172043011No Hit
CCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAA60.10752688172043011No Hit
ATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTC60.10752688172043011No Hit
CACACCACCTGTCCAAAAAGGCCTTCGATACGGGATAATCCTATTTATTA60.10752688172043011No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG60.10752688172043011No Hit
GTATAGTACGGATGCTACTTGTCCAATGATGGTAAAAGGGTAGCTTACTG60.10752688172043011No Hit
GTCCCAATGTATGGGATGGCGGATAGTAAGTTTGTAATTACTGTGGCCCC60.10752688172043011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)