FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005577319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51487
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC890.17285916833375414No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT870.1689746926408608No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA800.15537902771573406No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTAGAAAGTCATGTCA760.14761007632994738No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN720.13984112494416068No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT700.13595664925126733No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCTGTAAGTAGGAGAGTGATAT630.12236098432614059No Hit
GCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCAT630.12236098432614059No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT610.11847650863324724No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC590.11459203294035386No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC570.11070755724746052No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC550.10682308155456717No Hit
GTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCGGTGCCTC550.10682308155456717No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA550.10682308155456717No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA520.10099636801522716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)