EGAF00005577338 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577338
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	138246
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	261	0.18879388915411657	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	200	0.14466964686139203	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	185	0.13381942334678762	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	176	0.12730928923802498	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	170	0.12296919983218321	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAAGTCATGTCA	163	0.1179057621920345	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	160	0.1157357174891136	No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT	155	0.1121189763175788	No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC	152	0.10994893161465794	No Hit
ATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTA	151	0.10922558338035096	No Hit
GGCTAAGAGGGTGTTGGTTATTAAAATTAAGGCGAAGTTTATTACTCTTT	143	0.1034387975058953	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	141	0.10199210103728137	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	139	0.10054540456866745	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGACA	10	0.0075097363	142.19876	5
ATTGTGG	65	1.5899604E-7	65.630196	8
CCGTGCG	80	9.3532435E-9	62.21196	9
ATTAGAG	120	1.8189894E-12	59.249485	3
GAGGCAC	120	1.8189894E-12	59.249485	7
TATGCGA	75	1.9314366E-4	58.412792	145
CAATGCA	75	1.9314366E-4	58.412792	145
CACTAGA	50	2.2069995E-4	56.879505	2
TCACTAG	50	2.2069995E-4	56.879505	1
CATCGTA	50	2.2069995E-4	56.879505	9
GACATCG	50	2.2069995E-4	56.879505	7
ACATCGT	50	2.2069995E-4	56.879505	8
GTGTATA	40	0.0065244134	53.32454	2
GACTGCA	40	0.0065244134	53.32454	7
GCGAGGG	90	4.7517387E-4	48.677326	145
TGTATAT	105	7.9851816E-8	47.399586	3
TCCGTGC	110	1.1513475E-7	45.245064	8
AGGCACC	160	2.5465852E-11	44.437115	8
TTGTCGT	125	4.524328E-5	43.809593	145
CTAGACA	65	8.0521544E-4	43.753468	4