EGAF00005577348 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577348
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68738
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	120	0.1745759259798074	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	100	0.14547993831650616	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATATGTTTTTTGGAAAGTCATGTCA	100	0.14547993831650616	No Hit
ATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTA	91	0.1323867438680206	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	85	0.12365794756903023	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	83	0.1207483488027001	No Hit
CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA	82	0.11929354941953504	No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT	77	0.11201955250370974	No Hit
GCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCT	76	0.11056475312054467	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	75	0.10910995373737961	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	75	0.10910995373737961	No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC	74	0.10765515435421455	No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT	72	0.10474555558788444	No Hit
GTTGTATATAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATT	72	0.10474555558788444	No Hit
TCCTAACCCTACTCCTAATCACATAACCTATTCCCCCGAGCAATCTCAAT	70	0.10183595682155432	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGATGC	20	4.1896955E-4	106.46668	9
GTACGGA	20	4.1896955E-4	106.46668	6
TATGCGA	35	7.4731663E-4	91.99418	145
AATATAC	25	0.0010171493	85.17334	3
CTCTCCG	25	0.0010171493	85.17334	9
GGGATCA	55	4.5739573E-5	78.05567	145
ACTGATC	30	0.0020973568	70.97778	8
CCGTGCG	30	0.0020973568	70.97778	9
CTACGTA	30	0.0020973568	70.97778	9
TACTGAT	30	0.0020973568	70.97778	7
AACTGTT	50	0.003078111	64.39592	145
TGGTAGC	35	0.0038638737	60.8381	6
CATCCGG	55	0.004489997	58.54175	145
AAATGCG	40	0.005392848	55.92148	135-139
CGTCCTA	60	0.006335656	53.663273	145
GTTTAGC	40	0.006554725	53.23334	1
GATTATA	40	0.006554725	53.23334	1
AGTACGG	40	0.006554725	53.23334	5
CATTGGG	55	3.5510465E-4	51.62021	1
ATTGGGA	55	3.5510465E-4	51.62021	2