EGAF00005577349 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577349
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68738
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	121	0.17603072536297246	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	101	0.14693473769967122	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATATGTTTTTTGGAAAGTCATGTCA	87	0.12656754633536035	No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT	82	0.11929354941953504	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	82	0.11929354941953504	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	73	0.1062003549710495	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	72	0.10474555558788444	No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT	70	0.10183595682155432	No Hit
ATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTA	69	0.10038115743838925	No Hit
CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA	69	0.10038115743838925	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGGTA	10	0.007548965	141.89949	9
GTAGTCG	40	0.0011384612	82.74123	145
CCAATTC	30	0.0021006472	70.94974	8
CAATTCG	30	0.0021006472	70.94974	9
AGTGGTG	65	9.128238E-5	67.890236	145
GTTTAGC	45	1.3198561E-4	63.06644	1
CAGAGCG	45	1.3198561E-4	63.06644	9
ATAGATT	35	0.0038699245	60.81407	4
GGATTAC	35	0.0038699245	60.81407	1
GGGGTCG	50	2.2221678E-4	56.759792	9
ACATGAG	40	0.0053849337	55.942192	135-139
AGGTTTT	60	0.0056809704	55.160812	145
AGATTGG	40	0.006564977	53.21231	6
GATAGAT	40	0.006564977	53.21231	3
TCTAGCA	55	3.5579788E-4	51.599815	3
AGTTGGT	70	1.9084651E-5	50.67839	8
GAGTTGG	80	4.201668E-5	44.34359	7
GATACTC	70	0.0011675409	40.542713	7
TGAAGCG	70	0.0011675409	40.542713	5
CTCTAGC	150	3.072455E-8	37.839863	2