FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005577365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2421
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA50.20652622883106153No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA50.20652622883106153No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCAC50.20652622883106153No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG40.16522098306484925No Hit
GGCTCACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTA40.16522098306484925No Hit
GTTGTATATAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATT40.16522098306484925No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN40.16522098306484925No Hit
ATATGATAGTGAAATGGATTTTGGCGTAGGTTTGGTTTAGGGTGTAGCCT40.16522098306484925No Hit
TCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTG40.16522098306484925No Hit
ATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACAC40.16522098306484925No Hit
TATTTACTCTATCAAAGTAACTCTTTTATCAGACATATTTCTTAGGTTTG40.16522098306484925No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG40.16522098306484925No Hit
ATTTAGGCTTTATGGCCCTGAAGTAGGAACCAGATGTCGGATACAGTTCA40.16522098306484925No Hit
GCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGT30.12391573729863693No Hit
CATTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTG30.12391573729863693No Hit
CTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGGTTAATCGTGTGAC30.12391573729863693No Hit
AAATAATAGAATGAGGCAGGAATCAAAGACAGATACTGCGACATAGGGTG30.12391573729863693No Hit
CATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAA30.12391573729863693No Hit
CGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGGCGATGAGGACTAGG30.12391573729863693No Hit
ACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGC30.12391573729863693No Hit
CTCTAAATCACCACGATCAAAAGGAACAAGCATCAAGCACGCAGCAATGC30.12391573729863693No Hit
TCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC30.12391573729863693No Hit
GGTATATGGTTAGTGTGTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATG30.12391573729863693No Hit
GTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGA30.12391573729863693No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG30.12391573729863693No Hit
TTCTAGGACGATGGGCATGAAACTGTGGTTTGCTCCACAGATTTCAGAGC30.12391573729863693No Hit
CTTTAGGATGGGGTGTGATAGGTGGCACGGAGAATTTTGGATTCTCAGGG30.12391573729863693No Hit
ATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCC30.12391573729863693No Hit
GTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATAT30.12391573729863693No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC30.12391573729863693No Hit
ACTAAGCACTCTACTCTCAGTTTACTGCTAAATCCACCTTCGACCCTTAA30.12391573729863693No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT30.12391573729863693No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATAT30.12391573729863693No Hit
GCGGTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGA30.12391573729863693No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG30.12391573729863693No Hit
ATACTCATCATTAATAATCATAATGGCTATAGCAATAAAACTAGGAATAG30.12391573729863693No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA30.12391573729863693No Hit
ACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAA30.12391573729863693No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG30.12391573729863693No Hit
GTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA30.12391573729863693No Hit
GTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTAATCACTGCTGT30.12391573729863693No Hit
TCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTAT30.12391573729863693No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC30.12391573729863693No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers