FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005577371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4975
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT180.36180904522613067No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC140.2814070351758794No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC110.22110552763819094No Hit
ACTATATCTATTGCGCCAGGTTTCAATTTCTATCGCCTATACTTTATTTG100.20100502512562815No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCAC100.20100502512562815No Hit
TAATTAGGCTGTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAG90.18090452261306533No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG90.18090452261306533No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA80.16080402010050251No Hit
GTTTAAGGGGTTGGCTAGGGTATAATTGTCTGGGTCGCCTAGGAGGTCTG80.16080402010050251No Hit
ATGCAGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAAT80.16080402010050251No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA80.16080402010050251No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN80.16080402010050251No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG80.16080402010050251No Hit
CTATAGTAGTGTGCATGGTTATTACTTTTATTTGGAGTTGCACCAAAATT80.16080402010050251No Hit
CTAATACACCAGTCTTGTAAACCAGAGATGAAAACCTTTTTCCAAGGACA80.16080402010050251No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCTGTAAGTAGGAGAGTGATAT70.1407035175879397No Hit
GTTTAGCTCAGAGCGGTCAAGTTAAGTTGAAATCTCCTAAGTGTAAGTTG70.1407035175879397No Hit
GTACTATATCTATTGCGCCAGGTTTCAATTTCTATCGCCTATACTTTATT70.1407035175879397No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT70.1407035175879397No Hit
CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTG70.1407035175879397No Hit
GTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTTATCACTGCTGT60.1206030150753769No Hit
GTCTAGGCCATATGTGTTGGAGATTGAGACTAGTAGGGCTAGGCCTACCG60.1206030150753769No Hit
CCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCATTTATA60.1206030150753769No Hit
CTATATACCAATTCGGCTCAGTCTAATCCTTTTTGTAGTCACTCATAGGC60.1206030150753769No Hit
AGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACT60.1206030150753769No Hit
CAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCT60.1206030150753769No Hit
GTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCC60.1206030150753769No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC60.1206030150753769No Hit
ACATAGCACATTACAGTCAAATCCCTTCTTGTCCCCATGGATGACCCCCC60.1206030150753769No Hit
CTACTATAGCCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACC60.1206030150753769No Hit
GGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCTTTCCCT60.1206030150753769No Hit
ATAGTAGTGTGCATGGTTATTACTTTTATTTGGAGTTGCACCAAAATTTT60.1206030150753769No Hit
GTACAATATTCATGGTGACTGGCAGTAATGTACGAAATACATAGCGGTTG60.1206030150753769No Hit
CCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTA60.1206030150753769No Hit
CTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACT60.1206030150753769No Hit
GTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCC60.1206030150753769No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC50.10050251256281408No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG50.10050251256281408No Hit
CCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAG50.10050251256281408No Hit
GTACTATTTATACTAAAAGAGTAAGACCCTCATCAATAGATGGAGACATA50.10050251256281408No Hit
GGTTAATAGTGGGGGGTAAGGCGAGGTTAGCGAGGCTTGCTAGAAGTCAT50.10050251256281408No Hit
TTGTTAAGGTTGTGGATGATGGACCCGGAGCACATAAATAGTATGGCTTT50.10050251256281408No Hit
ATCCTGAGGCATGGGGGTCAGGGGTTGAGGTCTTGGTGAGTGTTTTAGTG50.10050251256281408No Hit
GCTAAATAGGTTGTTGTTGATTTGGTTAAAAAATAGTAGGGGGATGATGC50.10050251256281408No Hit
CTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCA50.10050251256281408No Hit
GTGTAGGAAGAGGCAGATAAAGAATATTGAGGCGCCATTGGCGTGAAGGT50.10050251256281408No Hit
GTATTATACCATAGCCGCCTAGTTTTAAGAGTACTGCGGCAAGTACTATT50.10050251256281408No Hit
CCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCT50.10050251256281408No Hit
CTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAAT50.10050251256281408No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTC50.10050251256281408No Hit
GGATAATGCCGATGTTTCAGGTTTCTGAGTAGAGAAATGATCCGTAATAT50.10050251256281408No Hit
GGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTTATCACT50.10050251256281408No Hit
GTACAAGGAAGGGGTAGGCTATGTGTTTTGTCAGGGGGTTGAGAATGAGT50.10050251256281408No Hit
GCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAA50.10050251256281408No Hit
ATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACG50.10050251256281408No Hit
ACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACT50.10050251256281408No Hit
CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA50.10050251256281408No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA50.10050251256281408No Hit
TAGTTATGTCATCCCTCTTATTAATCATCATCCTAGCCCTAAGTCTGGCC50.10050251256281408No Hit
CACCTGAGTTGTAAAAAACTCCAGTTGACACAAAATAAACTACGAAAGTG50.10050251256281408No Hit
CTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTG50.10050251256281408No Hit
CTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGA50.10050251256281408No Hit
AACTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTA50.10050251256281408No Hit
GTGTAAGTTGGGTGCTTTGTGTTAAGCTACACTCTGGTTCGTCCAAGTGC50.10050251256281408No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT50.10050251256281408No Hit
GAGTTGGAGTGTAGGATAAATCATGCTAAGGCGAGGATGAAACCGATATC50.10050251256281408No Hit
ATCAAAGACAGATACTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCA50.10050251256281408No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)