EGAF00005577378 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577378
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	74722
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGGGTGGTTGTGTTGATTCAAATTATGTGCTTTTTGGAAAGTCATGTCA	139	0.18602285806054442	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	123	0.1646101549744386	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	118	0.1579186852600305	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	90	0.12044645485934531	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	88	0.11776986697358209	No Hit
ATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTA	83	0.111078397259174	No Hit
CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA	82	0.10974010331629239	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	79	0.10572522148764754	No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC	77	0.1030486336018843	No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA	77	0.1030486336018843	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	76	0.1017103396590027	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAGTCG	15	0.006586484	148.47469	145
TAGTGCA	10	0.007628044	141.41393	4
GCATGGC	10	0.007628044	141.41393	8
GTAGTGC	10	0.007628044	141.41393	3
CGAATCA	40	0.0010975433	83.517006	145
CCTGCCG	35	3.8682243E-5	80.80796	9
CACCAGC	30	0.0021301329	70.70696	7
ATTAGAG	45	1.3431959E-4	62.85064	3
TGTCAGG	55	0.0038813113	60.739643	145
GACACTG	35	0.003924165	60.60597	5
CACTGAG	35	0.003924165	60.60597	7
TGACACT	35	0.003924165	60.60597	4
GCGAGTA	35	0.003924165	60.60597	9
GAGGCAC	50	2.2614148E-4	56.56557	7
TTAGGTG	60	0.005477494	55.678005	145
GGCAGGG	40	0.0066568553	53.030224	7
CTGACAC	40	0.0066568553	53.030224	3
TGCGAGT	40	0.0066568553	53.030224	8
GCAGGGG	40	0.0066568553	53.030224	8
CTGATGC	40	0.0066568553	53.030224	4