FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005577379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74722
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC1230.1646101549744386No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT980.13115280640239824No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC970.1298145124595166No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA940.12579963063087177No Hit
GTCTAGGCCATATGTGTTGGAGATTGAGACTAGTAGGGCTAGGCCCACCG940.12579963063087177No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGCTTTTTGGAAAGTCATGTCA910.12178474880222692No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT890.1191081609164637No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT860.11509327908781886No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG810.10840180937341076No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA810.10840180937341076No Hit
GCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCAT800.10706351543052915No Hit
ATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTA790.10572522148764754No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC770.1030486336018843No Hit
CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA750.10037204571612109No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)