FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005577387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2675
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN100.3738317757009346No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT80.29906542056074764No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC70.26168224299065423No Hit
CTTTAGTAGGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAA50.1869158878504673No Hit
CTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCC50.1869158878504673No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG50.1869158878504673No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC40.14953271028037382No Hit
TTGCTATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTA40.14953271028037382No Hit
TGCATGGGCTGTGACGATAACGTTGTAGATGTGGTCGTTACCTAGAAGGT40.14953271028037382No Hit
ATGAAGAATAGGGCGAAGGGGCCTGCGGCGTATTCGATGTTGAAGCCTGA40.14953271028037382No Hit
ATCCTAAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAA40.14953271028037382No Hit
GGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCTTTCCCT40.14953271028037382No Hit
GTGTAAGTTGGGTGCTTTGTGTTAAGCTACACTCTGGTTCGTCCAAGTGC40.14953271028037382No Hit
TGTTAGGGTTGTACGGTAGAACTGCTATTATTCATCCTATGTGGGTAATT40.14953271028037382No Hit
GGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGG30.11214953271028037No Hit
CGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGC30.11214953271028037No Hit
GTATTAGGATTAGGATTGTTGTGAAGTATAGTACGGATGCTACTTGTCCA30.11214953271028037No Hit
GTTTTGTTGTGAGTGTTAGGAAAAGGGCATACAGGACTAGGAAGCAGATA30.11214953271028037No Hit
GTTTAGCTCAGAGCGGTCAAGTTAAGTTGAAATCTCCTAAGTGTAAGTTG30.11214953271028037No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA30.11214953271028037No Hit
CTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAAC30.11214953271028037No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA30.11214953271028037No Hit
AAGCTACACTCTGGTTCGTCCAAGTGCACTTTCCAGTACACTTACCATGT30.11214953271028037No Hit
ATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACC30.11214953271028037No Hit
ACCATGTACTGTTAAGGATAGGTAGGTTTGTTGATATCCTAGTGGGTGAG30.11214953271028037No Hit
GGTATATGGTTAGTGTGTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATG30.11214953271028037No Hit
GCATTAGGAATGCCATTGCGATTAGAATGGGTACAATGAGGAGTAGGAGG30.11214953271028037No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG30.11214953271028037No Hit
GATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCA30.11214953271028037No Hit
GTACGGATGCTACTTGTCCAATGATGGTAAAGGGGTAGCTTACTGGTTGT30.11214953271028037No Hit
GAGTAGCACTCTTGTGCGGGATATTGATTTCACGGAGGATGGTGGTCAAG30.11214953271028037No Hit
GTCGGATACAGTTCACTTTAGCTACCCCCAAGTGTTATGGGCCCGGAGCG30.11214953271028037No Hit
GTTTTGATGTGGATTGGGTTTTTATGTACTACAGGTGGTCAAGTATTTAT30.11214953271028037No Hit
CTTCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT30.11214953271028037No Hit
GTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCT30.11214953271028037No Hit
GGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAA30.11214953271028037No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATAT30.11214953271028037No Hit
CCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAAC30.11214953271028037No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT30.11214953271028037No Hit
CTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCA30.11214953271028037No Hit
CCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAAC30.11214953271028037No Hit
GTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAG30.11214953271028037No Hit
CTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGC30.11214953271028037No Hit
AGGTTAATAGTGGGGGGTAAGGCGAGGTTAGCGAGGCTTGCTAGAAGTCA30.11214953271028037No Hit
AGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAA30.11214953271028037No Hit
GTAATATTGAACGTAGGTGCGATAAATAATGGGATGGGGTAGGAATCAAA30.11214953271028037No Hit
CTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAGC30.11214953271028037No Hit
TCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATA30.11214953271028037No Hit
GGCGAGGATGAAACCGATATCGCCGATACGGTTGTATAGGATTGCTTGAA30.11214953271028037No Hit
GTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCC30.11214953271028037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)