FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005577393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16928
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1500.8861058601134215No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG260.15359168241965973No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTG240.14177693761814747No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT200.11814744801512288No Hit
GTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCC180.10633270321361059No Hit
CTATTTATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGA180.10633270321361059No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC170.10042533081285444No Hit
GTATTATACCATAGCCGCCTAGTTTTAAGAGTACTGCGGCAAGTACTATT170.10042533081285444No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG170.10042533081285444No Hit
CTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGC170.10042533081285444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)