EGAF00005577411 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577411
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	53162
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	86	0.16176968511342688	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	77	0.14484029946202176	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	71	0.13355404236108498	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	69	0.12979195666077273	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	68	0.12791091381061662	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	67	0.12602987096046048	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	66	0.12414882811030437	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	63	0.11850569955983598	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	58	0.10910048530905533	No Hit
CTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGC	58	0.10910048530905533	No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC	55	0.10345735675858696	No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA	55	0.10345735675858696	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGTATA	15	0.007097926	144.74988	145
ATCTCTG	10	0.007667591	141.13112	2
CATCTCT	10	0.007667591	141.13112	1
ACCAATT	45	0.0019330545	72.37494	145
GTGAAGA	60	0.0060427394	54.281204	145
GCTGAAC	55	3.6469958E-4	51.320408	1
ACGCAGG	65	0.008292668	50.10573	145
CGCATGA	65	0.008292668	50.10573	145
CCTCGTG	60	5.601839E-4	47.04371	8
CTCGTGG	65	8.309865E-4	43.424965	9
TGAACCC	75	0.0016797349	37.634968	3
CTGAACC	75	0.0016797349	37.634968	2
TGAGGTG	135	2.5317748E-5	31.362474	5
ACCCTCG	90	0.004106869	31.362473	6
TATAGGA	90	0.004106869	31.362473	2
GAGGTGT	95	0.005350221	29.711817	6
CTAGGAC	95	0.005350221	29.711817	3
GTATAGG	145	4.1240994E-5	29.199543	1
ACCTGCC	100	0.0068740016	28.226227	8
GAACCCT	100	0.0068740016	28.226227	4