EGAF00005577435 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577435
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	123869
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	207	0.1671120296442209	No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA	190	0.1533878532966279	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	186	0.15015863533248835	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	186	0.15015863533248835	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	185	0.14935133084145347	No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC	161	0.12997602305661626	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	158	0.12755410958351163	No Hit
GCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCAT	155	0.12513219611040696	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	155	0.12513219611040696	No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT	150	0.12109567365523255	No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCTGTAAGTAGGAGAGTGATAT	142	0.11463723772695347	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	140	0.11302262874488371	No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC	137	0.11060071527177906	No Hit
GGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGT	137	0.11060071527177906	No Hit
CTCACTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACT	124	0.10010575688832557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTACC	35	0.0038003044	61.122704	2
TCTGTAC	35	0.0038003044	61.122704	1
CCTTCTG	105	1.2696546E-9	54.33129	9
CACGCCT	40	0.0064470093	53.482365	9
CCCACGC	40	0.0064470093	53.482365	7
CCACGCC	40	0.0064470093	53.482365	8
CTAAGTT	55	3.4811025E-4	51.86169	9
ACTAAGT	55	3.4811025E-4	51.86169	8
TTCTGCC	55	3.4811025E-4	51.86169	7
CATCGAC	85	9.932428E-7	50.33634	7
ATCGACC	85	9.932428E-7	50.33634	8
AGAATCG	65	0.008331916	50.107597	145
ATTCTGC	60	5.347269E-4	47.539886	6
TATACCT	125	5.9426384E-9	45.638287	5
TTCAAGA	80	4.0971026E-5	44.568638	3
TCAAGAG	80	4.0971026E-5	44.568638	4
CTATACC	145	4.456524E-10	44.26127	4
CCGTGCG	70	0.0011423836	40.74847	9
TCTTATC	75	0.0016036209	38.031906	8
ATCTTAT	75	0.0016036209	38.031906	7