EGAF00005577442 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577442
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	160814
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	259	0.16105562948499508	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	234	0.14550971930304576	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	221	0.1374258460084321	No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	210	0.13058564552837437	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	207	0.12872013630654047	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	202	0.12561095427015062	No Hit
GCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCAT	191	0.1187707537900929	No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT	187	0.116283408160981	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	184	0.1144178989391471	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	182	0.11317422612459115	No Hit
CTCCTAGCCTTACTACTAATAATCATTACATTTTGACTACCACAACTCAA	170	0.10571218923725546	No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA	166	0.10322484360814356	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	164	0.10198117079358762	No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT	161	0.10011566157175371	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTGCG	50	2.534216E-8	85.557014	9
TATGCGA	55	4.2327287E-5	79.38407	145
TTAGGTG	55	0.0042151688	59.538055	145
ACTCTTG	75	4.199519E-7	57.03801	8
GTAGCAC	75	4.199519E-7	57.03801	3
TGAGCGT	60	0.005948173	54.576546	145
GCGGGTA	40	0.0064549143	53.473133	9
CTGCACG	40	0.0064549143	53.473133	9
TACCTGC	40	0.0064549143	53.473133	6
TAGAGCT	55	3.487218E-4	51.852737	4
CGCGCCA	65	0.008162938	50.378353	145
TTGTACT	60	5.356644E-4	47.531673	4
CTGTGCC	60	5.356644E-4	47.531673	9
AAGCGAG	85	5.873236E-5	41.939713	9
GTATCAA	85	5.873236E-5	41.939713	9
CGCATGA	105	0.00103334	41.582134	145
TATGGTC	70	0.0011443777	40.741436	3
CTATAAC	70	0.0011443777	40.741436	4
ATGGTCT	70	0.0011443777	40.741436	4
GTAGTCC	140	1.6249032E-8	40.741436	4